Installation

It is recommended to use pip or conda installation. Please make sure the latest version is installed, as PyThresh is updated frequently:

pip install pythresh            # normal install
pip install --upgrade pythresh  # or update if needed

conda install -c conda-forge pythresh

Alternatively, you can get the version with the latest updates by cloning the repo and run setup.py file:

git clone https://github.com/KulikDM/pythresh.git
cd pythresh
pip install .

Or with pip:

pip install https://github.com/KulikDM/pythresh/archive/main.zip

Required Dependencies:

  • matplotlib

  • numpy>=1.13

  • pyod

  • scipy>=1.3.1

  • scikit_learn>=0.20.0

Optional Dependencies:

  • pyclustering (used in the CLUST thresholder)

  • ruptures (used in the CPD thresholder)

  • geomstats (used in the KARCH thresholder)

  • scikit-lego (used in the META thresholder)

  • joblib>=0.14.1 (used in the META thresholder and RANK)

  • pandas (used in the META thresholder)

  • torch (used in the VAE thresholder)

  • tqdm (used in the VAE thresholder)

  • xgboost>=2.0.0 (used in the RANK)